I think your best bet would be to try and find a PCM that was physically removed from a 2000 XJ with a manual tranny. I'm gonna look for that for my '99 XJ when I look for the PCM. I know that website "says" they can program this and that, but even if it is reprogrammed the pins for the NSS and whatnot will still be on the PCM. Personally it just seems like too much to go wrong. i know it will probably take longer to find one but it would be worth it. Also, when you do get the new PCM check all of the pins to make sure none are bent or broken. Something simple like that can cause a lot of headache.