There are all sorts of stuff you could look into with the 44. I talked to Carl about running the 50's gears in mine when I built it but was put off a bit by all the grinding of the case required to install them. For anyone else that may not be an issue at all tho.
Also, you didn't mention if you were going to run full width or narrow them (or maybe you did and I missed it) If you were going to narrow it you could always throw d50 inner c's on the ends and could then run the bigger joints (d60 size joints). But that may get too pricey if you have to get custom axles cut for it. In theory you could do that and run a 35 spline ARB with d50 gears on it and d60 u-joints and even finish it off with d60 35 spline outers and still have the weight/ground clearance of a 44 and almost the strength of a 60.
Either way, do call before you get any parts for the j54 as you'll need different carriers depending on whether you run the j54 or standard d44 gears. (with the d50 5.38's, for example, you'd run a case designed for ,say, 3.55 gears in a d44. And of course a case designed for the lower gears if you stay with the d44 gears). Good luck to ya either way you decide to go.