I'm thinking it has to do with the CPS. I had it out of the bellhousing until the very end so I don't think it could've gotten damaged but it was sitting on my garage floor for 5 days. I'm going to try my spare CPS today and see if that makes any difference, I'll report back.
Jeff in VA said:
Check your vac line to the MAP sensor. Maybe it pulled out when the back of the engine lowered (???)