Eventually I replaced my whole coolant system(hoses, t'stat and housing,water pump, radiator) because of this same issue. when I did the swap out I flushed the heater core and the block several times onder pressure with a water hose and got most of it out but now two weeks down the road it is slowly going back to the brown color due to the deposits left in the block and heater core. I found that the best way to get the sediment out is to fill the system with the flush and run it around for a little while then drain and repeat.