I agree with Jeff - looks like the cover and flywheel both have some fairly serious "heat checking" - which is usually caused by "floating" or "riding" the clutch pedal (read: "bad technique.")
If the iron is heat checked, then replace the pilot bushing and TO bearing out of hand - they're going to have been overheated. Also think hard about swapping out the transmission input seal while you've got it apart, since it's in line for a heat-related failure. You'll kick yourself if it it starts leaking in a couple weeks and you didn't do it now...
The critical measurement on the friction plate isn't the overall thickness, it's the thickness above the rivets. Compare that to new, but you'll still have friction left if you end up "clutching on the rivets." And, that's what will wreck parts more than anything.
But, do you see that band of blue on the flywheel? That shows high heat - and resurfacing (whether it can be done or not) isn't going to fix that. Replace it outright, and you'll have done a better job for yourself.
As far as the grinding noise you'd heard, I concur with trying to start moving in second or reverse - and see if that replicates it. Also, since you say the noise only really starts once you've let the clutch all the way out, I'm tempted to say it's in the transmission itself. If the noise is present when taking off in second and reverse as well, you've probably lost the input bearing. If it's just in first, it's in the geartrain somewhere - like the shift forks, first gear synchroniser ring, or something like that.