My experience:
I did a RE 3.5" AAL superflex kit about 2 weeks ago on my '00 XJ 2-door. I bought the new leaf spring eye bolts, fully intending to install them while I had the leaf packs off, and then got scared after trying to remove the front spring eye bolt on the driver's side. I had a 24" breaker bar on it and it wasn't moving (estimating 200-300 ft*lbs of torque there). So I stopped, and thought about it for a minute and just clamped the spring pack with a large c-clamp, and cut the center bolt off with a die grinder and cutoff wheel. Opened the c-clamp, and put the AAL in, pulled the pack back together with the c-clamp using a long drift punch to keep the center bolt holes in each leaf aligned. When everything was pulled tight, dropped the center bolts in and snugged them up.
I had a supplier to the shop I work at make me some new U-bolts: 1/2" dia. by 7" long (from the inside bottom of the curve to the tip of the threads for a C8.25" axle) which turned out to be 7 3/4" long. Plenty of room for shimming! Like Highmiles did, I'll be using a 2-2.5 degree shim to lower the pinion angle, at lease 'till I can afford the SYE and CV shaft. I'm also going to replace the factory spring pack and AAL with some full leaf packs (4.5" currie jeepspeed stuff, maybe?). My AAL setup sags about a half inch on the driver's side, probably due to me(250 lbs), my toolbox(75 lbs), and my inside-mounted full-size spare(only a lowly 235/75/15, like the other 4) all on the driver's side of the jeep. Overall lift in the rear was 4" initially.
So far, I've shimmed the t-case x-member down 1", putting it at 6.5 degrees downward angle. I have a very slight vibe at 40-45 mph, and I think that dropping the pinion angle ( currently at 8 degrees upward angle) will shut every thing up. I used stacks of 1/16" fender washers to find the amount of drop I needed, not necessarily believing all the manufacturers of 1" drop t-case x-members, but sure enough that's the ticket. I'm now looking to either buy one of the rusty's or tntcustoms x-members, with 1" of drop and overall under body clearance gain of like a 1/2".