Can't help you directly, but what I did was strip the XJ harness down (pulled the wiring for cruise control, front lighting, horns, windshield wipers, washer fluid level sensor and pumps, ABS, heated defrost grid, etc out of it) then look up each of the remaining wires one at a time and figure out what they did. Only took about one afternoon of muttered "WTFs" and a couple pages of notebook paper. I put a 94/95 XJ drivetrain into an 87 YJ with a CJ7 dashboard swapped in... was fun, learned a few things the hard way.
As a side note, you are going to have some fun with your VSS. You'll need a VSS to make the ECU run right when shifting and decelerating (and also to keep it from setting the CEL, though I doubt you'll care about that), and a mechanical speedometer gear housing to drive the CJ speedo, and you can only put one in the transfer case at a time since there's only one mounting hole. What I did was use the cruise control VSS out of an 87-90 XJ, it's behind the instrument cluster (make sure you keep the little black double threaded nut that makes a second speedo cable screw onto it) with a signal converter circuit that makes the 8 pulse per revolution variable reluctance / 2 wire sender look like an 8 pulse per revolution hall effect / 3 wire sender to the ECU, which is what 93 or so and later XJ ECUs want. I based my circuit off an LM1815 and a CD4041UBM buffer chip, if you want a schematic I can throw one together for you. All the chips and resistors/capacitors/etc I used ended up costing around $8 and you can breadboard it pretty easily.
If you're looking to make a factory tach work, you can probably get it going by using a couple switching diodes off the individual coil rail drivers on the ECU to diode-OR the signals together and feed a factory tach intended for a 6cyl, assuming the factory CJ 258 tach was fed off the negative side of the ignition coil primary.
Another gotcha - at least on a 94/95 donor, you DO need the fuse for the heated defrost grid to be installed, that fuse also feeds the starter motor solenoid! Without it, it won't even crank. I'm not sure if a 2000 PDC is set up the same way, double check it.
edit: technically this is probably supposed to be in "other tech" not "OEM tech" - moving it now. Let me know or post up here if you need any other info or run into any issues along the way.