i'd advise you find a junkyard or used 4.0 as a core so you can build the complete motor or at least 90% of it then just swap it in a weekend so there is less down time.
for all the work of a stroker along with money it isn't much more to just do an LSx at that point which will get you way better gains in every aspect.
my brother rebuild his 4.0 and did a lot of work to it in the fine details and it's not impressive at all, bone stock 01 jeep, it's quick but for the time, effort and $$$$ he put into it doesn't seem worth it.