shocks mounted on raised lower mounts and mounting into stock upper locations bother me,
1st of all i've delt with it and yes its a problem
no you can't just sling some short shocks under there and expect you lifted height to A)not bottom out the shock when compressed or B) have flex limited by the lack of extension of the shock
2nd problem encountered when raising the shock's lower mount to the top of the axle tube is you Will loose the added benefit of the shocks helping to control axle wrap unless the mount is positioned correctly, the stock mounting of rear shocks didn't really help axle wrap, but moving them to the top center of the tubes is a definite no-no
i currently don't have any pics of mine, but a brief desc till then may help give you some ideas
i'm running about 7" of lift and 9" travel ranchos
both lower mounts are positioned on the rear of the tubes of my d44 and are angled up-ward and are above the center of the axle tube slightly to clear rocks (unlike stock mounts always got hung on rocks)
the center of the lower mounts are directly below the inner line of the *frame-rail* of which custom upper mounts are positioned, whereby a piece of plate 3/8" was welded in and the original lower mount stud-bolts were welded in place so that the shock is angled forward about 45* and is in position to alow full articulation and also help control axle wrap/hop
by the way the lower mounts are the Rusty's offroad weld on type..
like these..