Maybe you damaged the yoke as you were trying to press out the u-joint? This happened to me when I finally decided to replace the u-joint after 80k miles. It was the biggest explosion sound when the hydraulic press finally pushed the u-joint out. All that pressure to press out the u-joint deforming the "ears" of my yoke beyond repair. Once these "ears" are deformed, then your centerline is completely off, causing the vibration.