The way I usually do a wiring harness project is - I get the FSM out. Then I take the original harness and mark every wire where it goes through the bulkhead connector as to its purpose in life. Trim all the wires off as far into the harness as I can (to give as much length as possible for splicing) then take the engine donor and ECU+harness. Completely unwrap that harness of all tape and loom tubing, strip out any sensors/equipment I won't be using (figure out how to bypass or disable it if needed), remove all unnecessary wiring. At that point, there should be a pile of wires and connectors that need to be powered or supply power, etc, hanging out of the harness. Get the FSM for that vehicle out (it's probably already out, given what you just did stripping the harness down.) Figure out what each wire does, match them up with the ones coming from the bulkhead connector of the stock harness. In some cases you'll need to use relays or get creative, but probably not with a RENIX getting an LT1. Once that's all done, get the engine in and the harness halves in, locate everything how I want it, lash the harness up exactly how I want it shaped with a billion cheap zipties. Temporarily splice the ends of the wires together that I mapped out for each section of the harness, test fire it. If it fires up properly, shorten and splice each wire properly to match the intended harness path. If it doesn't, debug, then do the same. Then go over the whole thing with dry vinyl harness wrapping tape, removing the zipties as I go, then add loom tubing and electrical tape where needed.
Bam, now you have a factory-appearance custom harness that fits the vehicle perfectly.