I ran the mud pits for a decade or more. A blanket approach to more torque is cubes or gears. Trying to stay in class, kept the cubes down some for us. Gears changed with every track, so we tuned for torque and swapped tires (between 31's and 33's, with 4.11 gears). The axle clearance is only an 1 1/2 difference. 36" tires were just too heavy to get and keep spinning well, with 4.0 cubes. Fine tuning the motor to a specific application, you can tweak the exhaust, the intake, the fuel and the timing/ ignition, generally speaking.
You have to figure out where you want the torque and tune to that target.
Where do you need the torque? Crawling, being able to gas it over a rock? Low to mid to get up a hill? Or pushing mud?
We had a whole lot of things to tune for, while pushing a ton of mud along with us. The thickness of the mud, getting the tires to turn over at the start and not getting caught between gears and out of the torque envelope near the end.
A good place to tune for torque is the flange between the cross over and the cat. if you've removed the cat. try a 1 13/16" re-stricter ( a piece of sheet metal with a 1 13/16" hole in the middle). This will bring the torque down the band a bit (actually closer to stock, with no cat), but may cost you some top end. Cheap and by my experience will move the usable torque, 200 RPM´s lower in the power band.
Tuning for torque, is mostly trial and error, the only way to get more across the entire band is cubes. If your willing to sacrifice top end, then gears. If you run a track or a regular route, you can tweak and tune some for that specific track.